正文
获取原文件references/jaspar.md
Base URL
https://jaspar.elixir.no/api/v1/
Auth
No auth required.
Key Endpoints
| Endpoint | Description |
|---|---|
/matrix/ |
List all TF binding profiles |
/matrix/{matrix_id}/ |
Specific profile (e.g. MA0139.1 for CTCF) |
/matrix/?tax_id={id}&collection=CORE |
Filter by species + collection |
/matrix/{id}/?format=jaspar |
Profile in JASPAR format |
/matrix/{id}/?format=meme |
Profile in MEME format |
/matrix/{id}/?format=transfac |
Profile in TRANSFAC format |
/taxon/ |
List taxonomic groups |
/collections/ |
List collections (CORE, CNE, etc.) |
Filter Parameters
tax_id— NCBI taxonomy ID (9606 for human)collection— CORE, CNE, PHYLOFACTS, etc.tf_class— TF structural classname— TF name searchpage,page_size— pagination
Example Calls
# Get CTCF binding profile
https://jaspar.elixir.no/api/v1/matrix/MA0139.1/
# Human CORE TF profiles
https://jaspar.elixir.no/api/v1/matrix/?tax_id=9606&collection=CORE&page_size=10
# Get profile in MEME format
https://jaspar.elixir.no/api/v1/matrix/MA0139.1/?format=meme
Response Format
JSON. Profiles include: matrix_id, name, pfm (position frequency matrix as A/C/G/T dict), sequence_logo URL, species, class, family.
API Docs
Swagger at https://jaspar.elixir.no/api/v1/docs/
Rate Limits
No published limits. Be reasonable.