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D005 临床事实提取

从已去标识化的临床章节和结构化记录中提取明确出现的症状、诊断、检验、用药与操作事实,保留原文和字段依据。

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开始使用

下载前阅读 SKILL.md 中的使用条件,并确认所用工具支持对应能力。

输入资料
Required: D004 document_structure_manifest.json D003 deidentified_manifest.json Optional but useful: D002 schema_linkage_profile.json for patient/encounter key hints D005 may consume two approved source classes: narrativ… 阅读本节完整说明
交付内容
clinical_fact_drafts.jsonl — finalized local fact drafts fact_extraction_manifest.json — text-free aggregate manifest fact_extraction_worklist.json — text-free extraction plan agent_extraction_completion.json — text-free… 阅读本节完整说明
  1. 获取完整包,保留配套文件的目录结构。
  2. 按照原文准备所需工具、依赖与输入资料。
  3. 阅读对应使用步骤与输入输出说明,在自己的环境中验证结果。

使用提示摘自原文,配套文件保留来源版本;实际运行条件以各包说明为准。

正文

获取原文件

references/clinical-fact-draft-contract.md

D005 emits mention-level, pre-context facts. A draft is not yet a final ClinicalFact.

Hard boundaries:

  • concept.surface_text must be explicitly present in the cited source.
  • concept.normalized_name is always null in D005.
  • Polarity, certainty, temporality, experiencer, active/resolved state, medication action resolution, terminology codes, and OMOP concept IDs are not decided here.
  • Narrative provenance uses exact zero-based offsets into the D004 full_text.
  • Structured provenance uses a zero-based data-row index plus field name.
  • Every draft carries context_resolution = pending_d006 and terminology_resolution = pending_d012.

A D005 fact can still carry raw attributes that are explicitly encoded in the same source record/span, such as:

  • raw lab value/unit/reference range
  • raw medication dose/route/frequency/action text
  • source diagnosis code
  • specimen/accession identifiers
  • structured event timestamp

These are copied, not normalized or interpreted.

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