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药代动力学与药效研究建模

组织 PK/PD 研究模型、参数、暴露与反应分析,保存数据依据、模型假设及评价结果。

开源精选医疗业务31 个文件50,135 Stars浏览次数 0K-Dense-AI/scientific-agent-skills MIT版本 a1043ef
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适用环境:Requires Python 3.12+ with NumPy 2+ and SciPy. No network access and no proprietary software. The estimation tools this skill orients you towards (NONMEM, Monolix, Phoenix, Simcyp, GastroPlus) are licensed separately and are never invoked by these scripts.

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获准使用的 PK/PD 研究资料 模型目标、参数与分析环境 阅读本节完整说明
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可复查的研究模型 模型评价与假设说明 阅读本节完整说明
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  2. 按照原文准备所需工具、依赖与输入资料。
  3. 阅读对应使用步骤与输入输出说明,在自己的环境中验证结果。

使用提示摘自原文,配套文件保留来源版本;实际运行条件以各包说明为准。

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references/ddi-and-qt.md

ICH M12 basic models

Use the current M12 guideline, with measured inputs, units and assay binding basis recorded. A positive screen calls for further evaluation; it is not a predicted clinical effect size. A negative screen does not exclude unmodeled mechanisms.

Mechanism Quantity Screening trigger
Reversible CYP 1+Cmax,u/Ki,u >=1.02
Oral gut CYP 1+(dose/0.25L)/Ki,u >=11
Time-dependent inhibition 1+(kinact*I/(KI,u+I))/kdeg, I=5*Cmax,u >=1.25
Kinetic induction 1/(1+Emax*I/(EC50,u+I)), I=10*Cmax,u <=0.8
OAT1/3, OCT2 Cmax,u/IC50,u >=0.1
MATE1/2-K; systemic P-gp/BCRP Cmax,u/IC50,u >=0.02
Intestinal P-gp/BCRP, oral (dose/0.25L)/IC50 >=10
OATP1B1/1B3 Iin,max,u/IC50,u >=0.1

Induction also requires interpretation of the experimental mRNA concentration-response evidence; the kinetic formula alone is not a complete induction assessment. For measured plasma fu<0.01, use 0.01 unless reliability at the low fraction has been demonstrated.

Mechanistic static model and units

The CLI's ka is per minute and Qh=97 L/hour, so multiply ka by 60 before combining them. Ih=fu*(Cmax+Fa*Fg*ka_hour*dose/(Qh*RB)); Ig=Fa*ka_hour*dose/Qen, Qen=18 L/hour. These inlet/enterocyte values differ from basic luminal dose/0.25L. Dose must use the same amount unit as concentration times liters (micromolar -> micromoles). The model separates hepatic/gut reversible inhibition, inactivation and induction:

AUCR = 1/(Ag*Bg*Cg*(1-Fg)+Fg) / (Ah*Bh*Ch*fm + 1-fm)

Its full-inhibition ceiling is 1/((1-fm)*Fg), while 1/(1-fm) is hepatic only. Run inhibition alone, induction alone and combined so cancellation cannot hide a signal. This implementation uses shared illustrative kinetic inputs and fixed adult flows; it does not implement every M12 case, metabolite contribution, transporter-enzyme coupling or time-dependent dosing profile. Escalate to qualified PBPK/clinical evaluation when the question needs those features.

QT concentration-response

The CLI regresses supplied placebo-corrected change from baseline QTc on concentration and reports a two-sided 90% CI at a specified exposure. Verify correction, units, timing, delayed effects, linearity, range coverage and influence. It assumes independent observations and is not the mixed model normally needed for repeated trial data. A nonzero intercept needs explanation, but is not an automatic model rejection rule.

The relevant E14 exclusion threshold is an upper confidence bound below 10 ms, in a study with adequate exposure/design and model assessment. A result meeting that threshold is not proof of no arrhythmia risk. Integrated nonclinical evidence has additional best-practice requirements. E14/S7B Q&A.

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