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药代动力学与药效研究建模

组织 PK/PD 研究模型、参数、暴露与反应分析,保存数据依据、模型假设及评价结果。

开源精选医疗业务31 个文件50,135 Stars浏览次数 0K-Dense-AI/scientific-agent-skills MIT版本 a1043ef
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适用环境:Requires Python 3.12+ with NumPy 2+ and SciPy. No network access and no proprietary software. The estimation tools this skill orients you towards (NONMEM, Monolix, Phoenix, Simcyp, GastroPlus) are licensed separately and are never invoked by these scripts.

输入资料
获准使用的 PK/PD 研究资料 模型目标、参数与分析环境 阅读本节完整说明
交付内容
可复查的研究模型 模型评价与假设说明 阅读本节完整说明
  1. 获取完整包,保留配套文件的目录结构。
  2. 按照原文准备所需工具、依赖与输入资料。
  3. 阅读对应使用步骤与输入输出说明,在自己的环境中验证结果。

使用提示摘自原文,配套文件保留来源版本;实际运行条件以各包说明为准。

正文

获取原文件

assets/nca-reporting-checklist.md

Record the applicable conventions and provenance below. The bundled helper uses one global BLQ rule, so location-dependent handling requires documented preprocessing.

The four conventions that change the answer

  • Trapezoidal rule: linear / linear-up-log-down / log-linear
  • BLQ handling, stated separately for each position:
    • leading (before the first quantifiable sample): [ zero / excluded ]
    • embedded: [ zero / LLOQ÷2 / excluded ]
    • trailing: [ excluded / other ]
  • Lambda_z selection: the rule, the minimum number of points, whether Tmax was excluded, and the window and point count actually used for each subject
  • AUCinf basis: observed Clast or predicted Clast

Data

  • Analyte, matrix, assay, LLOQ, and the bioanalytical validation report reference
  • Actual elapsed times used, not nominal — and nominal times used only for grouping
  • Dose actually administered per subject, including any deviations
  • Records excluded, with the reason, and confirmation the criteria were set before unblinding
  • Deviations in sampling time above [ ]% of the nominal time, and how they were handled

Parameters reported

  • Cmax and Tmax as observed values, never interpolated
  • AUClast, AUCinf (both observed- and predicted-based, or one with the basis stated)
  • % AUC extrapolated, per subject
  • lambda_z, t½, and the number of points and time span of the terminal fit, per subject
  • CL or CL/F, Vz or Vz/F — with /F used for every extravascular route
  • Vss only for intravenous data
  • At steady state: AUC(0-tau), Cavg, Cmin, PTF%, accumulation ratio — and not AUCinf
  • Partial AUCs, if pre-specified, with their intervals

Terminal-phase quality, per subject

  • Adjusted r-squared of the lambda_z regression
  • Span ratio (window duration ÷ t½); below 2 is a screening flag, not a universal exclusion
  • % AUC extrapolated; above 20% is a screening flag, not a universal exclusion
  • Number of points in the fit; flag below 3
  • Subjects for whom lambda_z was not estimable, and how they were handled in the summary

Summary statistics

  • Exposure metrics (AUC, Cmax) as geometric mean and geometric CV%
  • Tmax as median and range
  • Arithmetic mean, SD and CV% where relevant to the estimand, with the summary basis stated
  • n for each parameter, since it differs when lambda_z fails for some subjects

Presentation

  • Individual concentration-time profiles on both linear and semi-logarithmic axes
  • Mean profiles with a stated rule for handling BLQ in the mean
  • A table of individual parameters, not only summary statistics

Method and provenance

  • Software and version
  • Units for every parameter, and confirmation that dose and concentration units are consistent
  • Whether the analysis was pre-specified, and the reference to the plan
  • Any deviation from the plan, with its reason

The traps this checklist exists to catch

  1. Reporting AUCinf from a truncated steady-state profile.
  2. Interpolating Cmax, or reporting a mean Tmax.
  3. Quoting Vz as if it were Vss, or reporting Vss from oral data.
  4. Applying one BLQ rule to the test arm and another to the reference.
  5. Using a summary basis that does not match the estimand or comparing incompatible summaries.
  6. Summarising across subjects without saying that lambda_z failed for some of them.
  7. Omitting the lambda_z window, which makes the half-life unreproducible.

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